Hi, I'm Jonathan Rodiger

I'm a Senior Bioinformatics Engineer with over 7 years of experience building powerful bioinformatics tools, interactive web applications, and innovative AI-driven solutions.

About Me

I specialize in developing scalable software solutions, interactive web applications, and robust data pipelines for complex biological analyses. With over 7 years of experience spanning full-stack web development, relational database optimization, and leveraging large language models for advanced data aggregation, my work consistently bridges the gap between bioinformatics innovation and practical applications in genomic research and drug discovery. I'm passionate about creating tools that not only streamline scientific workflows but also empower researchers to explore data intuitively and effectively.

Core Strengths

  • Pipeline Development & Workflow Optimization
  • Cloud Computing & Infrastructure Design
  • Data Analysis & Scientific Computing
  • Software Architecture & Best Practices

Technical Expertise

PythonPostgreSQLDjangoNextflowAWSAI Agents
Profile photo

Publications

Selected academic publications and research work. View my complete publication history on Google Scholar.

REPTOR and CREBRF encode key regulators of muscle energy metabolism

P Saavedra, PA Dumesic, Y Hu, E Filine, P Jouandin, R Binari, J Rodiger, et al.

Nature Communications2023

Citations: 14

Next-generation large-scale binary protein interaction network for Drosophila melanogaster

HW Tang, K Spirohn, Y Hu, T Hao, IA Kovács, Y Gao, R Binari, J Rodiger, et al.

Nature Communications2023

Citations: 22

Paralog Explorer: A resource for mining information about paralogs in common research organisms

Y Hu, B Ewen-Campen, A Comjean, J Rodiger, SE Mohr, N Perrimon

Computational and Structural Biotechnology Journal2022

Citations: 12

SNP-CRISPR: A Web Tool for SNP-Specific Genome Editing

CL Chen, J Rodiger, V Chung, R Viswanatha, SE Mohr, Y Hu, N Perrimon

G32020

Citations: 53

Pooled CRISPR Screens in Drosophila Cells

R Viswanatha, R Brathwaite, Y Hu, Z Li, J Rodiger, P Merckaert, V Chung, et al.

Current Protocols in Molecular Biology2019

Citations: 13

Get in Touch

Have a question or want to work together? Feel free to reach out!